Mehmet Serkan Apaydın

Assistant Professor

PhD, Stanford University

apaydin@sehir.edu.tr

Office: 4024

Phone: +90 216 559 9000

Bio: Dr. Apaydin completed his Ph.D. at Stanford University, California, USA, where he worked on robot motion planning algorithms for studying molecular motion, in particular protein folding and ligand-protein binding as a David L. Cheriton Stanford Graduate Fellow. He then worked as a research associate at Dartmouth College and Duke University. In 2008 he returned back to his home country, and became a visiting faculty member at Sabanci University. Since 2010, he is with the Computer Science and Electrical Engineering Departments of Istanbul Sehir University.

Research Interests: Computational Biology, Artificial Intelligence

Funded projects:

Member of research Groups:

Publications:
  • 1. Umut Can Çakmak, Bülent Çatay, Mehmet Serkan Apaydin: A neural network approach for predicting speeds on road networks. SIU 2018: 1-4.
  • 2. Basri Ciftci, Mehmet Serkan Apaydin: A deep learning approach to sentiment analysis in Turkish. International Conference on Artificial Intelligence and Data Processing 2018
  • 3. Umut Can Çakmak, Mehmet Serkan Apaydin, Bülent Çatay: Traffic Speed Prediction with Neural Networks. OR 2017: 737-743.
  • 4. SeymaÇetnIkaya, Seyma Nur Ekren, Mehmet Serkan Apaydin: Progress in Nuclear Vector Replacement for NMR Protein Structure-Based Assignments. RAIRO - Operations Research 50(2):341-349 (2016). [2 Citations]
  • 5. Murodzhon Akhmedov, Bülent Çatay, Mehmet Serkan Apaydin: Automating unambiguous NOE data usage in NVR for NMR protein structure-based assignments. J. Bioinformatics and Computational Biology 13(6): (2015). [2 Citations]
  • 6. Seyma Nur Ekren, Mehmet Serkan Apaydin: Incorporating triple resonance experiment data into NVR for NMR protein structure-based assignments. SIU 2014: 1926-1929.
  • 7. Jeyhun Aslanov, Bülent Çatay, Mehmet Serkan Apaydin: An ant colony optimization approach for solving the nuclear magnetic resonance structure based assignment problem. GECCO (Companion) 2013: 1609-1616. [3 Citations]
  • 8. Murodzhon Akhmedov, Bülent Çatay, Mehmet Serkan Apaydin: Distinguishing the type of NOE for NMR protein Structure-Based Assignments. SIU 2013: 1-4.
  • 9. Gizem Çavuslar, Bülent Çatay, Mehmet Serkan Apaydin: A Tabu Search Approach for the NMR Protein Structure-Based Assignment Problem. IEEE/ACM Trans. Comput. Biology Bioinform. 9(6):1621-1628 (2012). [14 Citations]
  • 10. Mehmet Serkan Apaydn: Incorporating Amino Acid Typing Into Nuclear Magnetic Resonance Protein Structure-Based Assignments. Journal of Proteomics & Bioinformatics 2012: (2012). [1 Citation]
  • 11. Mehmet Serkan Apaydin, Bülent Çatay, Nicholas Patrick, Bruce Randall Donald: NVR-BIP: Nuclear Vector Replacement using Binary Integer Programming for NMR Structure-Based Assignments. Comput. J. 54(5):708-716 (2011). [19 Citations]
  • 12. Incorporating HADAMAC experiment into NVR for NMR Structure-Based Assignments H. Erdogan and M. S. Apaydin. 6th International Symposium on Health Informatics and Bioinformatics (HIBIT 2011), USA: IEEE (Institute of Electrical and Electronics Engineers)
  • 13. Mehmet Çagri Çalpur, Hakan Erdogan, Bülent Çatay, Bruce Randall Donald, Mehmet Serkan Apaydin: Developing a Scoring Function for NMR Structure-based Assignments using Machine Learning. ISCIS 2010: 87-90.
  • 14. Using amino acid typing to improve the accuracy of NMR structure based assignments H. Erdogan and M. S. Apaydin. 5th International Symposium on Health Informatics and Bioinformatics (HIBIT 2010), USA: IEEE (Institute of Electrical and Electronics Engineers), April 2010, 206-210 [1 Citation]
  • 15. Mehmet Serkan Apaydin, Bülent Çatay, Nicholas Patrick, Bruce Randall Donald: NVR-BIP: Nuclear vector replacement using binary integer programming for NMR structure-based assignments. ISCIS 2009: 177-182. [19 Citations]
  • 16. Mehmet Serkan Apaydn, Vincent Conitzer, Bruce Randall Donald: Structure-based protein NMR assignments using native structural ensembles. Journal of biomolecular NMR 40(4):263-276 (2008). [31 Citations]
  • 17. Tsung-Han Chiang, Mehmet Serkan Apaydin, Douglas L. Brutlag, David Hsu, Jean-Claude Latombe: Using Stochastic Roadmap Simulation to Predict Experimental Quantities in Protein Folding Kinetics: Folding Rates and Phi-Values. Journal of Computational Biology 14(5):578-593 (2007). [28 Citations]
  • 18. Tsung-Han Chiang, Mehmet Serkan Apaydin, Douglas L. Brutlag, David Hsu, Jean-Claude Latombe: Predicting Experimental Quantities in Protein Folding Kinetics Using Stochastic Roadmap Simulation. RECOMB 2006: 410-424. [17 Citations]
  • 19. Mehmet Serkan Apaydn, Douglas L Brutlag, Carlos Guestrin, David Hsu, Jean-Claude Latombe: Stochastic conformational roadmaps for computing ensemble properties of molecular motion. Algorithmic Foundations of Robotics V 2004: 131-147. [18 Citations]
  • 20. Mehmet Serkan Apaydin, Douglas L. Brutlag, Carlos Guestrin, David Hsu, Jean-Claude Latombe, Chris Varma: Stochastic Roadmap Simulation: An Efficient Representation and Algorithm for Analyzing Molecular Motion. Journal of Computational Biology 10(3/4):257-281 (2003). [161 Citations]
  • 21. Mehmet Serkan Apaydin, Carlos Guestrin, Chris Varma, Douglas L. Brutlag, Jean-Claude Latombe: Stochastic roadmap simulation for the study of ligand-protein interactions. ECCB 2002: 18-26. [29 Citations]
  • 22. Douglas L. Brutlag, Mehmet Serkan Apaydin, Carlos Guestrin, David Hsu, Chris Varma, Amit Pal Singh, Jean-Claude Latombe: Using robotics to fold proteins and dock ligands. ECCB 2002: 74-74.
  • 23. Mehmet Serkan Apaydin, Douglas L. Brutlag, Carlos Guestrin, David Hsu, Jean-Claude Latombe: Stochastic roadmap simulation: an efficient representation and algorithm for analyzing molecular motion. RECOMB 2002: 12-21.
  • 24. Mehmet Serkan Apaydin, Douglas L. Brutlag, Carlos Guestrin, David Hsu, Jean-Claude Latombe: Stochastic Conformational Roadmaps for Computing Ensemble Properties of Molecular Motion. WAFR 2002: 131-148. [17 Citations]
  • 25. Mehmet Serkan Apaydin, Amit Pal Singh, Douglas L. Brutlag, Jean-Claude Latombe: Capturing Molecular Energy Landscapes with Probabilistic Conformational Roadmaps. ICRA 2001: 932-939. [63 Citations]
  • 26. Richard Beigel, Noga Alon, Simon Kasif, Mehmet Serkan Apaydin, Lance Fortnow: An optimal procedure for gap closing in whole genome shotgun sequencing. RECOMB 2001: 22-30. [43 Citations]

2018 (2)

  • 1. Umut Can Çakmak, Bülent Çatay, Mehmet Serkan Apaydin: A neural network approach for predicting speeds on road networks. SIU 2018: 1-4.
  • 2. Basri Ciftci, Mehmet Serkan Apaydin: A deep learning approach to sentiment analysis in Turkish. International Conference on Artificial Intelligence and Data Processing 2018

2017 (1)

  • 3. Umut Can Çakmak, Mehmet Serkan Apaydin, Bülent Çatay: Traffic Speed Prediction with Neural Networks. OR 2017: 737-743.

2016 (1)

  • 4. SeymaÇetnIkaya, Seyma Nur Ekren, Mehmet Serkan Apaydin: Progress in Nuclear Vector Replacement for NMR Protein Structure-Based Assignments. RAIRO - Operations Research 50(2):341-349 (2016). [2 Citations]

2015 (1)

  • 5. Murodzhon Akhmedov, Bülent Çatay, Mehmet Serkan Apaydin: Automating unambiguous NOE data usage in NVR for NMR protein structure-based assignments. J. Bioinformatics and Computational Biology 13(6): (2015). [2 Citations]

2014 (1)

  • 6. Seyma Nur Ekren, Mehmet Serkan Apaydin: Incorporating triple resonance experiment data into NVR for NMR protein structure-based assignments. SIU 2014: 1926-1929.

2013 (2)

  • 7. Jeyhun Aslanov, Bülent Çatay, Mehmet Serkan Apaydin: An ant colony optimization approach for solving the nuclear magnetic resonance structure based assignment problem. GECCO (Companion) 2013: 1609-1616. [3 Citations]
  • 8. Murodzhon Akhmedov, Bülent Çatay, Mehmet Serkan Apaydin: Distinguishing the type of NOE for NMR protein Structure-Based Assignments. SIU 2013: 1-4.

2012 (2)

  • 9. Gizem Çavuslar, Bülent Çatay, Mehmet Serkan Apaydin: A Tabu Search Approach for the NMR Protein Structure-Based Assignment Problem. IEEE/ACM Trans. Comput. Biology Bioinform. 9(6):1621-1628 (2012). [14 Citations]
  • 10. Mehmet Serkan Apaydn: Incorporating Amino Acid Typing Into Nuclear Magnetic Resonance Protein Structure-Based Assignments. Journal of Proteomics & Bioinformatics 2012: (2012). [1 Citation]

2011 (2)

  • 11. Mehmet Serkan Apaydin, Bülent Çatay, Nicholas Patrick, Bruce Randall Donald: NVR-BIP: Nuclear Vector Replacement using Binary Integer Programming for NMR Structure-Based Assignments. Comput. J. 54(5):708-716 (2011). [19 Citations]
  • 12. Incorporating HADAMAC experiment into NVR for NMR Structure-Based Assignments H. Erdogan and M. S. Apaydin. 6th International Symposium on Health Informatics and Bioinformatics (HIBIT 2011), USA: IEEE (Institute of Electrical and Electronics Engineers)

2010 (2)

  • 13. Mehmet Çagri Çalpur, Hakan Erdogan, Bülent Çatay, Bruce Randall Donald, Mehmet Serkan Apaydin: Developing a Scoring Function for NMR Structure-based Assignments using Machine Learning. ISCIS 2010: 87-90.
  • 14. Using amino acid typing to improve the accuracy of NMR structure based assignments H. Erdogan and M. S. Apaydin. 5th International Symposium on Health Informatics and Bioinformatics (HIBIT 2010), USA: IEEE (Institute of Electrical and Electronics Engineers), April 2010, 206-210 [1 Citation]

2009 (1)

  • 15. Mehmet Serkan Apaydin, Bülent Çatay, Nicholas Patrick, Bruce Randall Donald: NVR-BIP: Nuclear vector replacement using binary integer programming for NMR structure-based assignments. ISCIS 2009: 177-182. [19 Citations]

2008 (1)

  • 16. Mehmet Serkan Apaydn, Vincent Conitzer, Bruce Randall Donald: Structure-based protein NMR assignments using native structural ensembles. Journal of biomolecular NMR 40(4):263-276 (2008). [31 Citations]

2007 (1)

  • 17. Tsung-Han Chiang, Mehmet Serkan Apaydin, Douglas L. Brutlag, David Hsu, Jean-Claude Latombe: Using Stochastic Roadmap Simulation to Predict Experimental Quantities in Protein Folding Kinetics: Folding Rates and Phi-Values. Journal of Computational Biology 14(5):578-593 (2007). [28 Citations]

2006 (1)

  • 18. Tsung-Han Chiang, Mehmet Serkan Apaydin, Douglas L. Brutlag, David Hsu, Jean-Claude Latombe: Predicting Experimental Quantities in Protein Folding Kinetics Using Stochastic Roadmap Simulation. RECOMB 2006: 410-424. [17 Citations]

2004 (1)

  • 19. Mehmet Serkan Apaydn, Douglas L Brutlag, Carlos Guestrin, David Hsu, Jean-Claude Latombe: Stochastic conformational roadmaps for computing ensemble properties of molecular motion. Algorithmic Foundations of Robotics V 2004: 131-147. [18 Citations]

2003 (1)

  • 20. Mehmet Serkan Apaydin, Douglas L. Brutlag, Carlos Guestrin, David Hsu, Jean-Claude Latombe, Chris Varma: Stochastic Roadmap Simulation: An Efficient Representation and Algorithm for Analyzing Molecular Motion. Journal of Computational Biology 10(3/4):257-281 (2003). [161 Citations]

2002 (4)

  • 21. Mehmet Serkan Apaydin, Carlos Guestrin, Chris Varma, Douglas L. Brutlag, Jean-Claude Latombe: Stochastic roadmap simulation for the study of ligand-protein interactions. ECCB 2002: 18-26. [29 Citations]
  • 22. Douglas L. Brutlag, Mehmet Serkan Apaydin, Carlos Guestrin, David Hsu, Chris Varma, Amit Pal Singh, Jean-Claude Latombe: Using robotics to fold proteins and dock ligands. ECCB 2002: 74-74.
  • 23. Mehmet Serkan Apaydin, Douglas L. Brutlag, Carlos Guestrin, David Hsu, Jean-Claude Latombe: Stochastic roadmap simulation: an efficient representation and algorithm for analyzing molecular motion. RECOMB 2002: 12-21.
  • 24. Mehmet Serkan Apaydin, Douglas L. Brutlag, Carlos Guestrin, David Hsu, Jean-Claude Latombe: Stochastic Conformational Roadmaps for Computing Ensemble Properties of Molecular Motion. WAFR 2002: 131-148. [17 Citations]

2001 (2)

  • 25. Mehmet Serkan Apaydin, Amit Pal Singh, Douglas L. Brutlag, Jean-Claude Latombe: Capturing Molecular Energy Landscapes with Probabilistic Conformational Roadmaps. ICRA 2001: 932-939. [63 Citations]
  • 26. Richard Beigel, Noga Alon, Simon Kasif, Mehmet Serkan Apaydin, Lance Fortnow: An optimal procedure for gap closing in whole genome shotgun sequencing. RECOMB 2001: 22-30. [43 Citations]

Book Chapters (1)

  • 1. Mehmet Serkan Apaydn, Douglas L Brutlag, Carlos Guestrin, David Hsu, Jean-Claude Latombe: Stochastic conformational roadmaps for computing ensemble properties of molecular motion. Algorithmic Foundations of Robotics V 2004: 131-147. [18 Citations]

Journal Papers (8)

  • 2. SeymaÇetnIkaya, Seyma Nur Ekren, Mehmet Serkan Apaydin: Progress in Nuclear Vector Replacement for NMR Protein Structure-Based Assignments. RAIRO - Operations Research 50(2):341-349 (2016). [2 Citations]
  • 3. Murodzhon Akhmedov, Bülent Çatay, Mehmet Serkan Apaydin: Automating unambiguous NOE data usage in NVR for NMR protein structure-based assignments. J. Bioinformatics and Computational Biology 13(6): (2015). [2 Citations]
  • 4. Gizem Çavuslar, Bülent Çatay, Mehmet Serkan Apaydin: A Tabu Search Approach for the NMR Protein Structure-Based Assignment Problem. IEEE/ACM Trans. Comput. Biology Bioinform. 9(6):1621-1628 (2012). [14 Citations]
  • 5. Mehmet Serkan Apaydn: Incorporating Amino Acid Typing Into Nuclear Magnetic Resonance Protein Structure-Based Assignments. Journal of Proteomics & Bioinformatics 2012: (2012). [1 Citation]
  • 6. Mehmet Serkan Apaydin, Bülent Çatay, Nicholas Patrick, Bruce Randall Donald: NVR-BIP: Nuclear Vector Replacement using Binary Integer Programming for NMR Structure-Based Assignments. Comput. J. 54(5):708-716 (2011). [19 Citations]
  • 7. Mehmet Serkan Apaydn, Vincent Conitzer, Bruce Randall Donald: Structure-based protein NMR assignments using native structural ensembles. Journal of biomolecular NMR 40(4):263-276 (2008). [31 Citations]
  • 8. Tsung-Han Chiang, Mehmet Serkan Apaydin, Douglas L. Brutlag, David Hsu, Jean-Claude Latombe: Using Stochastic Roadmap Simulation to Predict Experimental Quantities in Protein Folding Kinetics: Folding Rates and Phi-Values. Journal of Computational Biology 14(5):578-593 (2007). [28 Citations]
  • 9. Mehmet Serkan Apaydin, Douglas L. Brutlag, Carlos Guestrin, David Hsu, Jean-Claude Latombe, Chris Varma: Stochastic Roadmap Simulation: An Efficient Representation and Algorithm for Analyzing Molecular Motion. Journal of Computational Biology 10(3/4):257-281 (2003). [161 Citations]

Conference / Workshop Papers (17)

  • 10. Umut Can Çakmak, Bülent Çatay, Mehmet Serkan Apaydin: A neural network approach for predicting speeds on road networks. SIU 2018: 1-4.
  • 11. Basri Ciftci, Mehmet Serkan Apaydin: A deep learning approach to sentiment analysis in Turkish. International Conference on Artificial Intelligence and Data Processing 2018
  • 12. Umut Can Çakmak, Mehmet Serkan Apaydin, Bülent Çatay: Traffic Speed Prediction with Neural Networks. OR 2017: 737-743.
  • 13. Seyma Nur Ekren, Mehmet Serkan Apaydin: Incorporating triple resonance experiment data into NVR for NMR protein structure-based assignments. SIU 2014: 1926-1929.
  • 14. Jeyhun Aslanov, Bülent Çatay, Mehmet Serkan Apaydin: An ant colony optimization approach for solving the nuclear magnetic resonance structure based assignment problem. GECCO (Companion) 2013: 1609-1616. [3 Citations]
  • 15. Murodzhon Akhmedov, Bülent Çatay, Mehmet Serkan Apaydin: Distinguishing the type of NOE for NMR protein Structure-Based Assignments. SIU 2013: 1-4.
  • 16. Incorporating HADAMAC experiment into NVR for NMR Structure-Based Assignments H. Erdogan and M. S. Apaydin. 6th International Symposium on Health Informatics and Bioinformatics (HIBIT 2011), USA: IEEE (Institute of Electrical and Electronics Engineers)
  • 17. Mehmet Çagri Çalpur, Hakan Erdogan, Bülent Çatay, Bruce Randall Donald, Mehmet Serkan Apaydin: Developing a Scoring Function for NMR Structure-based Assignments using Machine Learning. ISCIS 2010: 87-90.
  • 18. Using amino acid typing to improve the accuracy of NMR structure based assignments H. Erdogan and M. S. Apaydin. 5th International Symposium on Health Informatics and Bioinformatics (HIBIT 2010), USA: IEEE (Institute of Electrical and Electronics Engineers), April 2010, 206-210 [1 Citation]
  • 19. Mehmet Serkan Apaydin, Bülent Çatay, Nicholas Patrick, Bruce Randall Donald: NVR-BIP: Nuclear vector replacement using binary integer programming for NMR structure-based assignments. ISCIS 2009: 177-182. [19 Citations]
  • 20. Tsung-Han Chiang, Mehmet Serkan Apaydin, Douglas L. Brutlag, David Hsu, Jean-Claude Latombe: Predicting Experimental Quantities in Protein Folding Kinetics Using Stochastic Roadmap Simulation. RECOMB 2006: 410-424. [17 Citations]
  • 21. Mehmet Serkan Apaydin, Carlos Guestrin, Chris Varma, Douglas L. Brutlag, Jean-Claude Latombe: Stochastic roadmap simulation for the study of ligand-protein interactions. ECCB 2002: 18-26. [29 Citations]
  • 22. Douglas L. Brutlag, Mehmet Serkan Apaydin, Carlos Guestrin, David Hsu, Chris Varma, Amit Pal Singh, Jean-Claude Latombe: Using robotics to fold proteins and dock ligands. ECCB 2002: 74-74.
  • 23. Mehmet Serkan Apaydin, Douglas L. Brutlag, Carlos Guestrin, David Hsu, Jean-Claude Latombe: Stochastic roadmap simulation: an efficient representation and algorithm for analyzing molecular motion. RECOMB 2002: 12-21.
  • 24. Mehmet Serkan Apaydin, Douglas L. Brutlag, Carlos Guestrin, David Hsu, Jean-Claude Latombe: Stochastic Conformational Roadmaps for Computing Ensemble Properties of Molecular Motion. WAFR 2002: 131-148. [17 Citations]
  • 25. Mehmet Serkan Apaydin, Amit Pal Singh, Douglas L. Brutlag, Jean-Claude Latombe: Capturing Molecular Energy Landscapes with Probabilistic Conformational Roadmaps. ICRA 2001: 932-939. [63 Citations]
  • 26. Richard Beigel, Noga Alon, Simon Kasif, Mehmet Serkan Apaydin, Lance Fortnow: An optimal procedure for gap closing in whole genome shotgun sequencing. RECOMB 2001: 22-30. [43 Citations]
  • 1. Mehmet Serkan Apaydin, Douglas L. Brutlag, Carlos Guestrin, David Hsu, Jean-Claude Latombe, Chris Varma: Stochastic Roadmap Simulation: An Efficient Representation and Algorithm for Analyzing Molecular Motion. Journal of Computational Biology 10(3/4):257-281 (2003). [161 Citations]
  • 2. Mehmet Serkan Apaydin, Amit Pal Singh, Douglas L. Brutlag, Jean-Claude Latombe: Capturing Molecular Energy Landscapes with Probabilistic Conformational Roadmaps. ICRA 2001: 932-939. [63 Citations]
  • 3. Richard Beigel, Noga Alon, Simon Kasif, Mehmet Serkan Apaydin, Lance Fortnow: An optimal procedure for gap closing in whole genome shotgun sequencing. RECOMB 2001: 22-30. [43 Citations]
  • 4. Mehmet Serkan Apaydn, Vincent Conitzer, Bruce Randall Donald: Structure-based protein NMR assignments using native structural ensembles. Journal of biomolecular NMR 40(4):263-276 (2008). [31 Citations]
  • 5. Mehmet Serkan Apaydin, Carlos Guestrin, Chris Varma, Douglas L. Brutlag, Jean-Claude Latombe: Stochastic roadmap simulation for the study of ligand-protein interactions. ECCB 2002: 18-26. [29 Citations]
  • 6. Tsung-Han Chiang, Mehmet Serkan Apaydin, Douglas L. Brutlag, David Hsu, Jean-Claude Latombe: Using Stochastic Roadmap Simulation to Predict Experimental Quantities in Protein Folding Kinetics: Folding Rates and Phi-Values. Journal of Computational Biology 14(5):578-593 (2007). [28 Citations]
  • 7. Mehmet Serkan Apaydin, Bülent Çatay, Nicholas Patrick, Bruce Randall Donald: NVR-BIP: Nuclear Vector Replacement using Binary Integer Programming for NMR Structure-Based Assignments. Comput. J. 54(5):708-716 (2011). [19 Citations]
  • 8. Mehmet Serkan Apaydin, Bülent Çatay, Nicholas Patrick, Bruce Randall Donald: NVR-BIP: Nuclear vector replacement using binary integer programming for NMR structure-based assignments. ISCIS 2009: 177-182. [19 Citations]
  • 9. Mehmet Serkan Apaydn, Douglas L Brutlag, Carlos Guestrin, David Hsu, Jean-Claude Latombe: Stochastic conformational roadmaps for computing ensemble properties of molecular motion. Algorithmic Foundations of Robotics V 2004: 131-147. [18 Citations]
  • 10. Tsung-Han Chiang, Mehmet Serkan Apaydin, Douglas L. Brutlag, David Hsu, Jean-Claude Latombe: Predicting Experimental Quantities in Protein Folding Kinetics Using Stochastic Roadmap Simulation. RECOMB 2006: 410-424. [17 Citations]
  • 11. Mehmet Serkan Apaydin, Douglas L. Brutlag, Carlos Guestrin, David Hsu, Jean-Claude Latombe: Stochastic Conformational Roadmaps for Computing Ensemble Properties of Molecular Motion. WAFR 2002: 131-148. [17 Citations]
  • 12. Gizem Çavuslar, Bülent Çatay, Mehmet Serkan Apaydin: A Tabu Search Approach for the NMR Protein Structure-Based Assignment Problem. IEEE/ACM Trans. Comput. Biology Bioinform. 9(6):1621-1628 (2012). [14 Citations]
  • 13. Jeyhun Aslanov, Bülent Çatay, Mehmet Serkan Apaydin: An ant colony optimization approach for solving the nuclear magnetic resonance structure based assignment problem. GECCO (Companion) 2013: 1609-1616. [3 Citations]
  • 14. Murodzhon Akhmedov, Bülent Çatay, Mehmet Serkan Apaydin: Automating unambiguous NOE data usage in NVR for NMR protein structure-based assignments. J. Bioinformatics and Computational Biology 13(6): (2015). [2 Citations]
  • 15. SeymaÇetnIkaya, Seyma Nur Ekren, Mehmet Serkan Apaydin: Progress in Nuclear Vector Replacement for NMR Protein Structure-Based Assignments. RAIRO - Operations Research 50(2):341-349 (2016). [2 Citations]
  • 16. Using amino acid typing to improve the accuracy of NMR structure based assignments H. Erdogan and M. S. Apaydin. 5th International Symposium on Health Informatics and Bioinformatics (HIBIT 2010), USA: IEEE (Institute of Electrical and Electronics Engineers), April 2010, 206-210 [1 Citation]
  • 17. Mehmet Serkan Apaydn: Incorporating Amino Acid Typing Into Nuclear Magnetic Resonance Protein Structure-Based Assignments. Journal of Proteomics & Bioinformatics 2012: (2012). [1 Citation]
  • 18. Seyma Nur Ekren, Mehmet Serkan Apaydin: Incorporating triple resonance experiment data into NVR for NMR protein structure-based assignments. SIU 2014: 1926-1929.
  • 19. Murodzhon Akhmedov, Bülent Çatay, Mehmet Serkan Apaydin: Distinguishing the type of NOE for NMR protein Structure-Based Assignments. SIU 2013: 1-4.
  • 20. Mehmet Çagri Çalpur, Hakan Erdogan, Bülent Çatay, Bruce Randall Donald, Mehmet Serkan Apaydin: Developing a Scoring Function for NMR Structure-based Assignments using Machine Learning. ISCIS 2010: 87-90.
  • 21. Incorporating HADAMAC experiment into NVR for NMR Structure-Based Assignments H. Erdogan and M. S. Apaydin. 6th International Symposium on Health Informatics and Bioinformatics (HIBIT 2011), USA: IEEE (Institute of Electrical and Electronics Engineers)
  • 22. Basri Ciftci, Mehmet Serkan Apaydin: A deep learning approach to sentiment analysis in Turkish. International Conference on Artificial Intelligence and Data Processing 2018
  • 23. Douglas L. Brutlag, Mehmet Serkan Apaydin, Carlos Guestrin, David Hsu, Chris Varma, Amit Pal Singh, Jean-Claude Latombe: Using robotics to fold proteins and dock ligands. ECCB 2002: 74-74.
  • 24. Mehmet Serkan Apaydin, Douglas L. Brutlag, Carlos Guestrin, David Hsu, Jean-Claude Latombe: Stochastic roadmap simulation: an efficient representation and algorithm for analyzing molecular motion. RECOMB 2002: 12-21.
  • 25. Umut Can Çakmak, Mehmet Serkan Apaydin, Bülent Çatay: Traffic Speed Prediction with Neural Networks. OR 2017: 737-743.
  • 26. Umut Can Çakmak, Bülent Çatay, Mehmet Serkan Apaydin: A neural network approach for predicting speeds on road networks. SIU 2018: 1-4.
İstanbul Şehir University
Altunizade Mah. Oymacı Sok. No: 15
34660 Istanbul, Turkey
Email: cs@sehir.edu.tr
Phone: +90 216 559 9000