Mehmet Serkan Apaydın

Assistant Professor

PhD, Stanford University

apaydin@sehir.edu.tr

Office: West Campus

Phone: +90 216 559 9000

Bio: Dr. Apaydin worked as a research and teaching assistant at Stanford University, California, USA, where he earned his Ph.D. degree in September 2004, working with Professor Latombe from Computer Science and Prof. Brutlag from Biochemistry. Then, he joined Dartmouth Computer Science Department as a post-doctoral fellow in the laboratory of Professor Donald. In September 2006, his lab moved to Duke University, and he joined Duke University’s Computer Science Department as a post-doctoral fellow. Before joining Istanbul Sehir University, he was a visiting assistant professor in the faculty of engineering and natural sciences of Sabanci University.

Research Interests: Computational Biology, Bioinformatics, Artificial Intelligence

Funded projects:

Member of research Groups:

Publications:
  • 1. SeymaÇetnIkaya, Seyma Nur Ekren, Mehmet Serkan Apaydin: Progress in Nuclear Vector Replacement for NMR Protein Structure-Based Assignments. RAIRO - Operations Research 50(2):341-349 (2016). [2 Citations]
  • 2. Murodzhon Akhmedov, Bülent Çatay, Mehmet Serkan Apaydin: Automating unambiguous NOE data usage in NVR for NMR protein structure-based assignments. J. Bioinformatics and Computational Biology 13(6): (2015). [2 Citations]
  • 3. Seyma Nur Ekren, Mehmet Serkan Apaydin: Incorporating triple resonance experiment data into NVR for NMR protein structure-based assignments. SIU 2014: 1926-1929.
  • 4. Jeyhun Aslanov, Bülent Çatay, Mehmet Serkan Apaydin: An ant colony optimization approach for solving the nuclear magnetic resonance structure based assignment problem. GECCO (Companion) 2013: 1609-1616. [3 Citations]
  • 5. Murodzhon Akhmedov, Bülent Çatay, Mehmet Serkan Apaydin: Distinguishing the type of NOE for NMR protein Structure-Based Assignments. SIU 2013: 1-4.
  • 6. Gizem Çavuslar, Bülent Çatay, Mehmet Serkan Apaydin: A Tabu Search Approach for the NMR Protein Structure-Based Assignment Problem. IEEE/ACM Trans. Comput. Biology Bioinform. 9(6):1621-1628 (2012). [14 Citations]
  • 7. Mehmet Serkan Apaydn: Incorporating Amino Acid Typing Into Nuclear Magnetic Resonance Protein Structure-Based Assignments. Journal of Proteomics & Bioinformatics 2012: (2012). [1 Citation]
  • 8. Mehmet Serkan Apaydin, Bülent Çatay, Nicholas Patrick, Bruce Randall Donald: NVR-BIP: Nuclear Vector Replacement using Binary Integer Programming for NMR Structure-Based Assignments. Comput. J. 54(5):708-716 (2011). [19 Citations]
  • 9. Incorporating HADAMAC experiment into NVR for NMR Structure-Based Assignments H. Erdogan and M. S. Apaydin. 6th International Symposium on Health Informatics and Bioinformatics (HIBIT 2011), USA: IEEE (Institute of Electrical and Electronics Engineers)
  • 10. Mehmet Çagri Çalpur, Hakan Erdogan, Bülent Çatay, Bruce Randall Donald, Mehmet Serkan Apaydin: Developing a Scoring Function for NMR Structure-based Assignments using Machine Learning. ISCIS 2010: 87-90.
  • 11. Using amino acid typing to improve the accuracy of NMR structure based assignments H. Erdogan and M. S. Apaydin. 5th International Symposium on Health Informatics and Bioinformatics (HIBIT 2010), USA: IEEE (Institute of Electrical and Electronics Engineers), April 2010, 206-210 [1 Citation]
  • 12. Mehmet Serkan Apaydin, Bülent Çatay, Nicholas Patrick, Bruce Randall Donald: NVR-BIP: Nuclear vector replacement using binary integer programming for NMR structure-based assignments. ISCIS 2009: 177-182. [19 Citations]
  • 13. Mehmet Serkan Apaydn, Vincent Conitzer, Bruce Randall Donald: Structure-based protein NMR assignments using native structural ensembles. Journal of biomolecular NMR 40(4):263-276 (2008). [31 Citations]
  • 14. Tsung-Han Chiang, Mehmet Serkan Apaydin, Douglas L. Brutlag, David Hsu, Jean-Claude Latombe: Using Stochastic Roadmap Simulation to Predict Experimental Quantities in Protein Folding Kinetics: Folding Rates and Phi-Values. Journal of Computational Biology 14(5):578-593 (2007). [28 Citations]
  • 15. Tsung-Han Chiang, Mehmet Serkan Apaydin, Douglas L. Brutlag, David Hsu, Jean-Claude Latombe: Predicting Experimental Quantities in Protein Folding Kinetics Using Stochastic Roadmap Simulation. RECOMB 2006: 410-424. [17 Citations]
  • 16. Mehmet Serkan Apaydn, Douglas L Brutlag, Carlos Guestrin, David Hsu, Jean-Claude Latombe: Stochastic conformational roadmaps for computing ensemble properties of molecular motion. Algorithmic Foundations of Robotics V 2004: 131-147. [18 Citations]
  • 17. Mehmet Serkan Apaydin, Douglas L. Brutlag, Carlos Guestrin, David Hsu, Jean-Claude Latombe, Chris Varma: Stochastic Roadmap Simulation: An Efficient Representation and Algorithm for Analyzing Molecular Motion. Journal of Computational Biology 10(3/4):257-281 (2003). [161 Citations]
  • 18. Mehmet Serkan Apaydin, Carlos Guestrin, Chris Varma, Douglas L. Brutlag, Jean-Claude Latombe: Stochastic roadmap simulation for the study of ligand-protein interactions. ECCB 2002: 18-26. [29 Citations]
  • 19. Douglas L. Brutlag, Mehmet Serkan Apaydin, Carlos Guestrin, David Hsu, Chris Varma, Amit Pal Singh, Jean-Claude Latombe: Using robotics to fold proteins and dock ligands. ECCB 2002: 74-74.
  • 20. Mehmet Serkan Apaydin, Douglas L. Brutlag, Carlos Guestrin, David Hsu, Jean-Claude Latombe: Stochastic roadmap simulation: an efficient representation and algorithm for analyzing molecular motion. RECOMB 2002: 12-21.
  • 21. Mehmet Serkan Apaydin, Douglas L. Brutlag, Carlos Guestrin, David Hsu, Jean-Claude Latombe: Stochastic Conformational Roadmaps for Computing Ensemble Properties of Molecular Motion. WAFR 2002: 131-148. [17 Citations]
  • 22. Mehmet Serkan Apaydin, Amit Pal Singh, Douglas L. Brutlag, Jean-Claude Latombe: Capturing Molecular Energy Landscapes with Probabilistic Conformational Roadmaps. ICRA 2001: 932-939. [63 Citations]
  • 23. Richard Beigel, Noga Alon, Simon Kasif, Mehmet Serkan Apaydin, Lance Fortnow: An optimal procedure for gap closing in whole genome shotgun sequencing. RECOMB 2001: 22-30. [43 Citations]

2016 (1)

  • 1. SeymaÇetnIkaya, Seyma Nur Ekren, Mehmet Serkan Apaydin: Progress in Nuclear Vector Replacement for NMR Protein Structure-Based Assignments. RAIRO - Operations Research 50(2):341-349 (2016). [2 Citations]

2015 (1)

  • 2. Murodzhon Akhmedov, Bülent Çatay, Mehmet Serkan Apaydin: Automating unambiguous NOE data usage in NVR for NMR protein structure-based assignments. J. Bioinformatics and Computational Biology 13(6): (2015). [2 Citations]

2014 (1)

  • 3. Seyma Nur Ekren, Mehmet Serkan Apaydin: Incorporating triple resonance experiment data into NVR for NMR protein structure-based assignments. SIU 2014: 1926-1929.

2013 (2)

  • 4. Jeyhun Aslanov, Bülent Çatay, Mehmet Serkan Apaydin: An ant colony optimization approach for solving the nuclear magnetic resonance structure based assignment problem. GECCO (Companion) 2013: 1609-1616. [3 Citations]
  • 5. Murodzhon Akhmedov, Bülent Çatay, Mehmet Serkan Apaydin: Distinguishing the type of NOE for NMR protein Structure-Based Assignments. SIU 2013: 1-4.

2012 (2)

  • 6. Gizem Çavuslar, Bülent Çatay, Mehmet Serkan Apaydin: A Tabu Search Approach for the NMR Protein Structure-Based Assignment Problem. IEEE/ACM Trans. Comput. Biology Bioinform. 9(6):1621-1628 (2012). [14 Citations]
  • 7. Mehmet Serkan Apaydn: Incorporating Amino Acid Typing Into Nuclear Magnetic Resonance Protein Structure-Based Assignments. Journal of Proteomics & Bioinformatics 2012: (2012). [1 Citation]

2011 (2)

  • 8. Mehmet Serkan Apaydin, Bülent Çatay, Nicholas Patrick, Bruce Randall Donald: NVR-BIP: Nuclear Vector Replacement using Binary Integer Programming for NMR Structure-Based Assignments. Comput. J. 54(5):708-716 (2011). [19 Citations]
  • 9. Incorporating HADAMAC experiment into NVR for NMR Structure-Based Assignments H. Erdogan and M. S. Apaydin. 6th International Symposium on Health Informatics and Bioinformatics (HIBIT 2011), USA: IEEE (Institute of Electrical and Electronics Engineers)

2010 (2)

  • 10. Mehmet Çagri Çalpur, Hakan Erdogan, Bülent Çatay, Bruce Randall Donald, Mehmet Serkan Apaydin: Developing a Scoring Function for NMR Structure-based Assignments using Machine Learning. ISCIS 2010: 87-90.
  • 11. Using amino acid typing to improve the accuracy of NMR structure based assignments H. Erdogan and M. S. Apaydin. 5th International Symposium on Health Informatics and Bioinformatics (HIBIT 2010), USA: IEEE (Institute of Electrical and Electronics Engineers), April 2010, 206-210 [1 Citation]

2009 (1)

  • 12. Mehmet Serkan Apaydin, Bülent Çatay, Nicholas Patrick, Bruce Randall Donald: NVR-BIP: Nuclear vector replacement using binary integer programming for NMR structure-based assignments. ISCIS 2009: 177-182. [19 Citations]

2008 (1)

  • 13. Mehmet Serkan Apaydn, Vincent Conitzer, Bruce Randall Donald: Structure-based protein NMR assignments using native structural ensembles. Journal of biomolecular NMR 40(4):263-276 (2008). [31 Citations]

2007 (1)

  • 14. Tsung-Han Chiang, Mehmet Serkan Apaydin, Douglas L. Brutlag, David Hsu, Jean-Claude Latombe: Using Stochastic Roadmap Simulation to Predict Experimental Quantities in Protein Folding Kinetics: Folding Rates and Phi-Values. Journal of Computational Biology 14(5):578-593 (2007). [28 Citations]

2006 (1)

  • 15. Tsung-Han Chiang, Mehmet Serkan Apaydin, Douglas L. Brutlag, David Hsu, Jean-Claude Latombe: Predicting Experimental Quantities in Protein Folding Kinetics Using Stochastic Roadmap Simulation. RECOMB 2006: 410-424. [17 Citations]

2004 (1)

  • 16. Mehmet Serkan Apaydn, Douglas L Brutlag, Carlos Guestrin, David Hsu, Jean-Claude Latombe: Stochastic conformational roadmaps for computing ensemble properties of molecular motion. Algorithmic Foundations of Robotics V 2004: 131-147. [18 Citations]

2003 (1)

  • 17. Mehmet Serkan Apaydin, Douglas L. Brutlag, Carlos Guestrin, David Hsu, Jean-Claude Latombe, Chris Varma: Stochastic Roadmap Simulation: An Efficient Representation and Algorithm for Analyzing Molecular Motion. Journal of Computational Biology 10(3/4):257-281 (2003). [161 Citations]

2002 (4)

  • 18. Mehmet Serkan Apaydin, Carlos Guestrin, Chris Varma, Douglas L. Brutlag, Jean-Claude Latombe: Stochastic roadmap simulation for the study of ligand-protein interactions. ECCB 2002: 18-26. [29 Citations]
  • 19. Douglas L. Brutlag, Mehmet Serkan Apaydin, Carlos Guestrin, David Hsu, Chris Varma, Amit Pal Singh, Jean-Claude Latombe: Using robotics to fold proteins and dock ligands. ECCB 2002: 74-74.
  • 20. Mehmet Serkan Apaydin, Douglas L. Brutlag, Carlos Guestrin, David Hsu, Jean-Claude Latombe: Stochastic roadmap simulation: an efficient representation and algorithm for analyzing molecular motion. RECOMB 2002: 12-21.
  • 21. Mehmet Serkan Apaydin, Douglas L. Brutlag, Carlos Guestrin, David Hsu, Jean-Claude Latombe: Stochastic Conformational Roadmaps for Computing Ensemble Properties of Molecular Motion. WAFR 2002: 131-148. [17 Citations]

2001 (2)

  • 22. Mehmet Serkan Apaydin, Amit Pal Singh, Douglas L. Brutlag, Jean-Claude Latombe: Capturing Molecular Energy Landscapes with Probabilistic Conformational Roadmaps. ICRA 2001: 932-939. [63 Citations]
  • 23. Richard Beigel, Noga Alon, Simon Kasif, Mehmet Serkan Apaydin, Lance Fortnow: An optimal procedure for gap closing in whole genome shotgun sequencing. RECOMB 2001: 22-30. [43 Citations]

Book Chapters (1)

  • 1. Mehmet Serkan Apaydn, Douglas L Brutlag, Carlos Guestrin, David Hsu, Jean-Claude Latombe: Stochastic conformational roadmaps for computing ensemble properties of molecular motion. Algorithmic Foundations of Robotics V 2004: 131-147. [18 Citations]

Journal Papers (8)

  • 2. SeymaÇetnIkaya, Seyma Nur Ekren, Mehmet Serkan Apaydin: Progress in Nuclear Vector Replacement for NMR Protein Structure-Based Assignments. RAIRO - Operations Research 50(2):341-349 (2016). [2 Citations]
  • 3. Murodzhon Akhmedov, Bülent Çatay, Mehmet Serkan Apaydin: Automating unambiguous NOE data usage in NVR for NMR protein structure-based assignments. J. Bioinformatics and Computational Biology 13(6): (2015). [2 Citations]
  • 4. Gizem Çavuslar, Bülent Çatay, Mehmet Serkan Apaydin: A Tabu Search Approach for the NMR Protein Structure-Based Assignment Problem. IEEE/ACM Trans. Comput. Biology Bioinform. 9(6):1621-1628 (2012). [14 Citations]
  • 5. Mehmet Serkan Apaydn: Incorporating Amino Acid Typing Into Nuclear Magnetic Resonance Protein Structure-Based Assignments. Journal of Proteomics & Bioinformatics 2012: (2012). [1 Citation]
  • 6. Mehmet Serkan Apaydin, Bülent Çatay, Nicholas Patrick, Bruce Randall Donald: NVR-BIP: Nuclear Vector Replacement using Binary Integer Programming for NMR Structure-Based Assignments. Comput. J. 54(5):708-716 (2011). [19 Citations]
  • 7. Mehmet Serkan Apaydn, Vincent Conitzer, Bruce Randall Donald: Structure-based protein NMR assignments using native structural ensembles. Journal of biomolecular NMR 40(4):263-276 (2008). [31 Citations]
  • 8. Tsung-Han Chiang, Mehmet Serkan Apaydin, Douglas L. Brutlag, David Hsu, Jean-Claude Latombe: Using Stochastic Roadmap Simulation to Predict Experimental Quantities in Protein Folding Kinetics: Folding Rates and Phi-Values. Journal of Computational Biology 14(5):578-593 (2007). [28 Citations]
  • 9. Mehmet Serkan Apaydin, Douglas L. Brutlag, Carlos Guestrin, David Hsu, Jean-Claude Latombe, Chris Varma: Stochastic Roadmap Simulation: An Efficient Representation and Algorithm for Analyzing Molecular Motion. Journal of Computational Biology 10(3/4):257-281 (2003). [161 Citations]

Conference / Workshop Papers (14)

  • 10. Seyma Nur Ekren, Mehmet Serkan Apaydin: Incorporating triple resonance experiment data into NVR for NMR protein structure-based assignments. SIU 2014: 1926-1929.
  • 11. Jeyhun Aslanov, Bülent Çatay, Mehmet Serkan Apaydin: An ant colony optimization approach for solving the nuclear magnetic resonance structure based assignment problem. GECCO (Companion) 2013: 1609-1616. [3 Citations]
  • 12. Murodzhon Akhmedov, Bülent Çatay, Mehmet Serkan Apaydin: Distinguishing the type of NOE for NMR protein Structure-Based Assignments. SIU 2013: 1-4.
  • 13. Incorporating HADAMAC experiment into NVR for NMR Structure-Based Assignments H. Erdogan and M. S. Apaydin. 6th International Symposium on Health Informatics and Bioinformatics (HIBIT 2011), USA: IEEE (Institute of Electrical and Electronics Engineers)
  • 14. Mehmet Çagri Çalpur, Hakan Erdogan, Bülent Çatay, Bruce Randall Donald, Mehmet Serkan Apaydin: Developing a Scoring Function for NMR Structure-based Assignments using Machine Learning. ISCIS 2010: 87-90.
  • 15. Using amino acid typing to improve the accuracy of NMR structure based assignments H. Erdogan and M. S. Apaydin. 5th International Symposium on Health Informatics and Bioinformatics (HIBIT 2010), USA: IEEE (Institute of Electrical and Electronics Engineers), April 2010, 206-210 [1 Citation]
  • 16. Mehmet Serkan Apaydin, Bülent Çatay, Nicholas Patrick, Bruce Randall Donald: NVR-BIP: Nuclear vector replacement using binary integer programming for NMR structure-based assignments. ISCIS 2009: 177-182. [19 Citations]
  • 17. Tsung-Han Chiang, Mehmet Serkan Apaydin, Douglas L. Brutlag, David Hsu, Jean-Claude Latombe: Predicting Experimental Quantities in Protein Folding Kinetics Using Stochastic Roadmap Simulation. RECOMB 2006: 410-424. [17 Citations]
  • 18. Mehmet Serkan Apaydin, Carlos Guestrin, Chris Varma, Douglas L. Brutlag, Jean-Claude Latombe: Stochastic roadmap simulation for the study of ligand-protein interactions. ECCB 2002: 18-26. [29 Citations]
  • 19. Douglas L. Brutlag, Mehmet Serkan Apaydin, Carlos Guestrin, David Hsu, Chris Varma, Amit Pal Singh, Jean-Claude Latombe: Using robotics to fold proteins and dock ligands. ECCB 2002: 74-74.
  • 20. Mehmet Serkan Apaydin, Douglas L. Brutlag, Carlos Guestrin, David Hsu, Jean-Claude Latombe: Stochastic roadmap simulation: an efficient representation and algorithm for analyzing molecular motion. RECOMB 2002: 12-21.
  • 21. Mehmet Serkan Apaydin, Douglas L. Brutlag, Carlos Guestrin, David Hsu, Jean-Claude Latombe: Stochastic Conformational Roadmaps for Computing Ensemble Properties of Molecular Motion. WAFR 2002: 131-148. [17 Citations]
  • 22. Mehmet Serkan Apaydin, Amit Pal Singh, Douglas L. Brutlag, Jean-Claude Latombe: Capturing Molecular Energy Landscapes with Probabilistic Conformational Roadmaps. ICRA 2001: 932-939. [63 Citations]
  • 23. Richard Beigel, Noga Alon, Simon Kasif, Mehmet Serkan Apaydin, Lance Fortnow: An optimal procedure for gap closing in whole genome shotgun sequencing. RECOMB 2001: 22-30. [43 Citations]
  • 1. Mehmet Serkan Apaydin, Douglas L. Brutlag, Carlos Guestrin, David Hsu, Jean-Claude Latombe, Chris Varma: Stochastic Roadmap Simulation: An Efficient Representation and Algorithm for Analyzing Molecular Motion. Journal of Computational Biology 10(3/4):257-281 (2003). [161 Citations]
  • 2. Mehmet Serkan Apaydin, Amit Pal Singh, Douglas L. Brutlag, Jean-Claude Latombe: Capturing Molecular Energy Landscapes with Probabilistic Conformational Roadmaps. ICRA 2001: 932-939. [63 Citations]
  • 3. Richard Beigel, Noga Alon, Simon Kasif, Mehmet Serkan Apaydin, Lance Fortnow: An optimal procedure for gap closing in whole genome shotgun sequencing. RECOMB 2001: 22-30. [43 Citations]
  • 4. Mehmet Serkan Apaydn, Vincent Conitzer, Bruce Randall Donald: Structure-based protein NMR assignments using native structural ensembles. Journal of biomolecular NMR 40(4):263-276 (2008). [31 Citations]
  • 5. Mehmet Serkan Apaydin, Carlos Guestrin, Chris Varma, Douglas L. Brutlag, Jean-Claude Latombe: Stochastic roadmap simulation for the study of ligand-protein interactions. ECCB 2002: 18-26. [29 Citations]
  • 6. Tsung-Han Chiang, Mehmet Serkan Apaydin, Douglas L. Brutlag, David Hsu, Jean-Claude Latombe: Using Stochastic Roadmap Simulation to Predict Experimental Quantities in Protein Folding Kinetics: Folding Rates and Phi-Values. Journal of Computational Biology 14(5):578-593 (2007). [28 Citations]
  • 7. Mehmet Serkan Apaydin, Bülent Çatay, Nicholas Patrick, Bruce Randall Donald: NVR-BIP: Nuclear Vector Replacement using Binary Integer Programming for NMR Structure-Based Assignments. Comput. J. 54(5):708-716 (2011). [19 Citations]
  • 8. Mehmet Serkan Apaydin, Bülent Çatay, Nicholas Patrick, Bruce Randall Donald: NVR-BIP: Nuclear vector replacement using binary integer programming for NMR structure-based assignments. ISCIS 2009: 177-182. [19 Citations]
  • 9. Mehmet Serkan Apaydn, Douglas L Brutlag, Carlos Guestrin, David Hsu, Jean-Claude Latombe: Stochastic conformational roadmaps for computing ensemble properties of molecular motion. Algorithmic Foundations of Robotics V 2004: 131-147. [18 Citations]
  • 10. Tsung-Han Chiang, Mehmet Serkan Apaydin, Douglas L. Brutlag, David Hsu, Jean-Claude Latombe: Predicting Experimental Quantities in Protein Folding Kinetics Using Stochastic Roadmap Simulation. RECOMB 2006: 410-424. [17 Citations]
  • 11. Mehmet Serkan Apaydin, Douglas L. Brutlag, Carlos Guestrin, David Hsu, Jean-Claude Latombe: Stochastic Conformational Roadmaps for Computing Ensemble Properties of Molecular Motion. WAFR 2002: 131-148. [17 Citations]
  • 12. Gizem Çavuslar, Bülent Çatay, Mehmet Serkan Apaydin: A Tabu Search Approach for the NMR Protein Structure-Based Assignment Problem. IEEE/ACM Trans. Comput. Biology Bioinform. 9(6):1621-1628 (2012). [14 Citations]
  • 13. Jeyhun Aslanov, Bülent Çatay, Mehmet Serkan Apaydin: An ant colony optimization approach for solving the nuclear magnetic resonance structure based assignment problem. GECCO (Companion) 2013: 1609-1616. [3 Citations]
  • 14. Murodzhon Akhmedov, Bülent Çatay, Mehmet Serkan Apaydin: Automating unambiguous NOE data usage in NVR for NMR protein structure-based assignments. J. Bioinformatics and Computational Biology 13(6): (2015). [2 Citations]
  • 15. SeymaÇetnIkaya, Seyma Nur Ekren, Mehmet Serkan Apaydin: Progress in Nuclear Vector Replacement for NMR Protein Structure-Based Assignments. RAIRO - Operations Research 50(2):341-349 (2016). [2 Citations]
  • 16. Using amino acid typing to improve the accuracy of NMR structure based assignments H. Erdogan and M. S. Apaydin. 5th International Symposium on Health Informatics and Bioinformatics (HIBIT 2010), USA: IEEE (Institute of Electrical and Electronics Engineers), April 2010, 206-210 [1 Citation]
  • 17. Mehmet Serkan Apaydn: Incorporating Amino Acid Typing Into Nuclear Magnetic Resonance Protein Structure-Based Assignments. Journal of Proteomics & Bioinformatics 2012: (2012). [1 Citation]
  • 18. Seyma Nur Ekren, Mehmet Serkan Apaydin: Incorporating triple resonance experiment data into NVR for NMR protein structure-based assignments. SIU 2014: 1926-1929.
  • 19. Murodzhon Akhmedov, Bülent Çatay, Mehmet Serkan Apaydin: Distinguishing the type of NOE for NMR protein Structure-Based Assignments. SIU 2013: 1-4.
  • 20. Mehmet Çagri Çalpur, Hakan Erdogan, Bülent Çatay, Bruce Randall Donald, Mehmet Serkan Apaydin: Developing a Scoring Function for NMR Structure-based Assignments using Machine Learning. ISCIS 2010: 87-90.
  • 21. Incorporating HADAMAC experiment into NVR for NMR Structure-Based Assignments H. Erdogan and M. S. Apaydin. 6th International Symposium on Health Informatics and Bioinformatics (HIBIT 2011), USA: IEEE (Institute of Electrical and Electronics Engineers)
  • 22. Douglas L. Brutlag, Mehmet Serkan Apaydin, Carlos Guestrin, David Hsu, Chris Varma, Amit Pal Singh, Jean-Claude Latombe: Using robotics to fold proteins and dock ligands. ECCB 2002: 74-74.
  • 23. Mehmet Serkan Apaydin, Douglas L. Brutlag, Carlos Guestrin, David Hsu, Jean-Claude Latombe: Stochastic roadmap simulation: an efficient representation and algorithm for analyzing molecular motion. RECOMB 2002: 12-21.
İstanbul Şehir University
Altunizade Mah. Oymacı Sok. No: 15
34660 Istanbul, Turkey
Email: cs@sehir.edu.tr
Phone: +90 216 559 9000